PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 367aa    MW: 41612.5 Da    PI: 4.8602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12246genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-20118167255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++G+r+++ +g+W+AeIrdp++     r++lg+++t eeAa+a++aa+++++g
  PEQU_12246 118 QFRGIRQRP-WGKWAAEIRDPRK---GERVWLGTYDTSEEAARAYDAAARRIRG 167
                 69*******.**********954...3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32118176IPR001471AP2/ERF domain
CDDcd000181.23E-19118176No hitNo description
SuperFamilySSF541711.96E-22118177IPR016177DNA-binding domain
SMARTSM003804.3E-37118181IPR001471AP2/ERF domain
PROSITE profilePS5103224.434118175IPR001471AP2/ERF domain
PRINTSPR003678.8E-11119130IPR001471AP2/ERF domain
PfamPF008477.7E-14119167IPR001471AP2/ERF domain
PRINTSPR003678.8E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MCGGAIISDY IATARPQRVT ADYLWPDLRK KKKGSRKIRR AAYEDDFEAD FREFEDETDV  60
NEAVDVDDEE ELIEVKPFAF RSNGPPLSLG VKERSNIKKR PQLDGPAEKL AKRKRKNQFR  120
GIRQRPWGKW AAEIRDPRKG ERVWLGTYDT SEEAARAYDA AARRIRGKKA KVNFPDEFPQ  180
AAQNHVKLNA PKTQKPKLYD LTNEYNFNQV FGFPNAYYNA TSSPGLGKVE LLKLEPATSS  240
PTLKALSPSQ EVPNFLSEQE SNSLNSSDFG WEHEANMPEI TSIPASIVEN LESGFLEESE  300
QKKKLKNNSE LSDELSAFEP YMKFEPFLEG GSDLSFDFLL GADLTQDGIN FVNLWSFEDT  360
PMAEGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-20118175563ATERF1
2gcc_A7e-20118175563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197115KKRPQLDGPAEKLAKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784363.11e-108PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLD5L1391e-104D5L139_MALDO; AP2 domain class transcription factor
STRINGPOPTR_0003s06930.17e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-41related to AP2 2